BindingDB Reactant_set_id Ligand SMILES Ligand InChI Ligand InChI Key BindingDB MonomerID BindingDB Ligand Name Target Name Target Source Organism According to Curator or DataSource Ki (nM) IC50 (nM) Kd (nM) EC50 (nM) kon (M-1-s-1) koff (s-1) pH Temp (C) Curation/DataSource Article DOI BindingDB Entry DOI PMID PubChem AID Patent Number Authors Institution Link to Ligand in BindingDB Link to Target in BindingDB Link to Ligand-Target Pair in BindingDB Ligand HET ID in PDB PDB ID(s) for Ligand-Target Complex PubChem CID of Ligand PubChem SID of Ligand ChEBI ID of Ligand ChEMBL ID of Ligand DrugBank ID of Ligand IUPHAR_GRAC ID of Ligand KEGG ID of Ligand ZINC ID of Ligand Number of Protein Chains in Target (>1 implies a multichain complex) BindingDB Target Chain Sequence PDB ID(s) of Target Chain UniProt (SwissProt) Recommended Name of Target Chain UniProt (SwissProt) Entry Name of Target Chain UniProt (SwissProt) Primary ID of Target Chain UniProt (SwissProt) Secondary ID(s) of Target Chain UniProt (SwissProt) Alternative ID(s) of Target Chain UniProt (TrEMBL) Submitted Name of Target Chain UniProt (TrEMBL) Entry Name of Target Chain UniProt (TrEMBL) Primary ID of Target Chain UniProt (TrEMBL) Secondary ID(s) of Target Chain UniProt (TrEMBL) Alternative ID(s) of Target Chain 351633 ONC(=O)CCCCCCC(=O)Nc1ccc(c(c1)C(O)=O)-c1c2ccc(O)cc2oc2cc(=O)ccc12 InChI=1S/C28H26N2O8/c31-17-8-11-20-23(14-17)38-24-15-18(32)9-12-21(24)27(20)19-10-7-16(13-22(19)28(35)36)29-25(33)5-3-1-2-4-6-26(34)30-37/h7-15,31,37H,1-6H2,(H,29,33)(H,30,34)(H,35,36) VMWAUNDDWSBVRR-UHFFFAOYSA-N 198125 fl-SAHA Histone deacetylase 6 [440-798] 50 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198125 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198125&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 122197913 318489198 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351637 CC(\C=C\C(=O)NO)\C=C(/C)C(=O)c1ccc(cc1)N(C)C InChI=1S/C17H22N2O3/c1-12(5-10-16(20)18-22)11-13(2)17(21)14-6-8-15(9-7-14)19(3)4/h5-12,22H,1-4H3,(H,18,20)/b10-5+,13-11+ ALCVRKZFLFWUAZ-VFIIPLLCSA-N 198120 TSA Histone deacetylase 6 [440-798] 0.8 1.4 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198120 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198120&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 91895926 318489193 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351638 OCCN(C(=O)Cc1ccc(cc1)C(=O)NO)c1ccccc1 InChI=1S/C17H18N2O4/c20-11-10-19(15-4-2-1-3-5-15)16(21)12-13-6-8-14(9-7-13)17(22)18-23/h1-9,20,23H,10-12H2,(H,18,22) RFAZNTABYJYOAR-UHFFFAOYSA-N 198121 HPOB Histone deacetylase 6 [440-798] 1.0 1.8 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198121 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198121&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 5OJ 5EF7 71532921 318489194 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351639 C[C@@H]1NC(=O)[C@H]2CCCN2C(=O)[C@H](CCCCCC(=O)[C@@H]2CO2)NC(=O)[C@@H](C)NC1=O InChI=1S/C21H32N4O6/c1-12-18(27)22-13(2)19(28)24-14(7-4-3-5-9-16(26)17-11-31-17)21(30)25-10-6-8-15(25)20(29)23-12/h12-15,17H,3-11H2,1-2H3,(H,22,27)(H,23,29)(H,24,28)/t12-,13+,14-,15+,17-/m0/s1 GNYCTMYOHGBSBI-SVZOTFJBSA-N 198122 HC toxin Histone deacetylase 6 [440-798] 350 600 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198122 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198122&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 13889849 318489195 C15676 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351640 CC(=O)C(F)(F)F InChI=1S/C3H3F3O/c1-2(7)3(4,5)6/h1H3 FHUDAMLDXFJHJE-UHFFFAOYSA-N 198123 Trifluoroketone Histone deacetylase 6 [440-798] 800 1400 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198123 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198123&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search W6X 7M8R,6ZAM 9871 318489196 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351641 ONC(=O)\C=C\c1cccc(c1)S(=O)(=O)Nc1ccccc1 InChI=1S/C15H14N2O4S/c18-15(16-19)10-9-12-5-4-8-14(11-12)22(20,21)17-13-6-2-1-3-7-13/h1-11,17,19H,(H,16,18)/b10-9+ NCNRHFGMJRPRSK-MDZDMXLPSA-N 25150 (2E)-N-hydroxy-3-[3-(phenylsulfamoyl)phenyl]prop-2-enamide::Belinosta::Belinostat::PXD-101::PXD101 Histone deacetylase 6 [440-798] 1.1 1.9 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=25150 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=25150&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 5OG 5EEN 6918638 56374291 61076 ZINC03818726 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351642 Cc1[nH]c2ccccc2c1CCNCc1ccc(C=CC(=O)NO)cc1 InChI=1S/C21H23N3O2/c1-15-18(19-4-2-3-5-20(19)23-15)12-13-22-14-17-8-6-16(7-9-17)10-11-21(25)24-26/h2-11,22-23,26H,12-14H2,1H3,(H,24,25)/b11-10+ FPOHNWQLNRZRFC-ZHACJKMWSA-N 198124 Panobinostat Histone deacetylase 6 [440-798] 1.4 2.5 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=198124 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=198124&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search LBH 5EF8 6918837 318489197 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351643 ONC(=O)CCCCCCC(=O)Nc1ccccc1 InChI=1S/C14H20N2O3/c17-13(15-12-8-4-3-5-9-12)10-6-1-2-7-11-14(18)16-19/h3-5,8-9,19H,1-2,6-7,10-11H2,(H,15,17)(H,16,18) WAEXFXRVDQXREF-UHFFFAOYSA-N 19149 CHEMBL98::N-hydroxy-N'-phenyloctanediamide::SAHA::US10011611, SAHA::US10188756, Compound SAHA::US11207431, SAHA::US11505523, Compound SAHA::US9115116, SAHA::US9353061, SAHA::US9428447, SAHA::US9695181, Vorinostat::Vorinostat::Zolinza::cid_5311::suberoylanilide hydroxamic acid Histone deacetylase 6 [440-798] 0.6 1.1 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=19149 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=19149&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search SHH 7SGG,3C0Z,8BPC,4LXZ,5EEI,1ZZ1,1T69,4R7L,7JVU,4QA0,4BZ6,1C3S,4QA2,7ZZS 5311 46519184 45716 CHEMBL98 DB02546 6852 ZINC01543873 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8 351644 ONC(=O)\C=C\C#Cc1ccc(NS(=O)(=O)c2ccccc2)cc1 InChI=1S/C17H14N2O4S/c20-17(18-21)9-5-4-6-14-10-12-15(13-11-14)19-24(22,23)16-7-2-1-3-8-16/h1-3,5,7-13,19,21H,(H,18,20)/b9-5+ IVTKCTFTVKYWIQ-WEVVVXLNSA-N 50123957 (E)-5-(3-Benzenesulfonylamino-phenyl)-pent-2-en-4-ynoic acid hydroxyamide::(E)-5-(4-Benzenesulfonylamino-phenyl)-pent-2-en-4-ynoic acid hydroxyamide::5-(4-Benzenesulfonylamino-phenyl)-pent-2-en-4-ynoic acid hydroxyamide::CHEMBL314389::Oxamflatin Histone deacetylase 6 [440-798] 4.3 7.5 25.00 C Curated from the literature by BindingDB 10.1038/nchembio.2134 10.7270/Q2TH8KH1 27454933 aid1802011 Hai, Y; University of Pennsylvania,, DW University of Pennsylvania http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=50123957 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=8342&target=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=50123957&enzyme=Histone+deacetylase+6+%5B440-798%5D&column=ki&startPg=0&Increment=50&submit=Search 10154438 104016324 CHEMBL314389 ZINC26500270 1 SSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEELRLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSITRESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPEGYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSATVSINNVLRAHAPFWSSLR Histone deacetylase 6 F8W4B7_DANRE F8W4B7 A0A8M3BBK8