BindingDB Reactant_set_id Ligand SMILES Ligand InChI Ligand InChI Key BindingDB MonomerID BindingDB Ligand Name Target Name Target Source Organism According to Curator or DataSource Ki (nM) IC50 (nM) Kd (nM) EC50 (nM) kon (M-1-s-1) koff (s-1) pH Temp (C) Curation/DataSource Article DOI BindingDB Entry DOI PMID PubChem AID Patent Number Authors Institution Link to Ligand in BindingDB Link to Target in BindingDB Link to Ligand-Target Pair in BindingDB Ligand HET ID in PDB PDB ID(s) for Ligand-Target Complex PubChem CID of Ligand PubChem SID of Ligand ChEBI ID of Ligand ChEMBL ID of Ligand DrugBank ID of Ligand IUPHAR_GRAC ID of Ligand KEGG ID of Ligand ZINC ID of Ligand Number of Protein Chains in Target (>1 implies a multichain complex) BindingDB Target Chain Sequence PDB ID(s) of Target Chain UniProt (SwissProt) Recommended Name of Target Chain UniProt (SwissProt) Entry Name of Target Chain UniProt (SwissProt) Primary ID of Target Chain UniProt (SwissProt) Secondary ID(s) of Target Chain UniProt (SwissProt) Alternative ID(s) of Target Chain UniProt (TrEMBL) Submitted Name of Target Chain UniProt (TrEMBL) Entry Name of Target Chain UniProt (TrEMBL) Primary ID of Target Chain UniProt (TrEMBL) Secondary ID(s) of Target Chain UniProt (TrEMBL) Alternative ID(s) of Target Chain 59848 OC(=O)c1nc([nH]c(=O)c1O)-c1ccccc1 InChI=1S/C11H8N2O4/c14-8-7(11(16)17)12-9(13-10(8)15)6-4-2-1-3-5-6/h1-5,14H,(H,16,17)(H,12,13,15) ZCILTNACHNCSCB-UHFFFAOYSA-N 33414 CHEMBL440562::pyrimidinol carboxylic acid, 6 Ribonuclease H1 Homo sapiens >100000 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33414 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33414&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 502382 85267032 CHEMBL440562 ZINC03583890 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 59849 OC(=O)c1nc(Cc2ccccc2)[nH]c(=O)c1O InChI=1S/C12H10N2O4/c15-10-9(12(17)18)13-8(14-11(10)16)6-7-4-2-1-3-5-7/h1-5,15H,6H2,(H,17,18)(H,13,14,16) KKFDSUVIQPBLJU-UHFFFAOYSA-N 33415 CHEMBL204900::pyrimidinol carboxylic acid, 7 Ribonuclease H1 Homo sapiens >100000 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33415 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33415&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 54694603 85267033 CHEMBL204900 ZINC13683427 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 59850 OC(=O)c1nc(CCc2ccccc2)[nH]c(=O)c1O InChI=1S/C13H12N2O4/c16-11-10(13(18)19)14-9(15-12(11)17)7-6-8-4-2-1-3-5-8/h1-5,16H,6-7H2,(H,18,19)(H,14,15,17) OJDQPOULWGKJIP-UHFFFAOYSA-N 33416 pyrimidinol carboxylic acid, 8 Ribonuclease H1 Homo sapiens >100000 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33416 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33416&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 54735568 85267034 ZINC43079857 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 59851 OC(=O)c1nc(Cc2ccc(Cl)c(Cl)c2)[nH]c(=O)c1O InChI=1S/C12H8Cl2N2O4/c13-6-2-1-5(3-7(6)14)4-8-15-9(12(19)20)10(17)11(18)16-8/h1-3,17H,4H2,(H,19,20)(H,15,16,18) OZDSTVKQUHMIRA-UHFFFAOYSA-N 33417 pyrimidinol carboxylic acid, 9 Ribonuclease H1 Homo sapiens >100000 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33417 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33417&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search ON1 3HYF 54728656 85267035 ZINC42920129 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 59852 COc1ccc(Cc2nc(C(O)=O)c(O)c(=O)[nH]2)cc1Br InChI=1S/C13H11BrN2O5/c1-21-8-3-2-6(4-7(8)14)5-9-15-10(13(19)20)11(17)12(18)16-9/h2-4,17H,5H2,1H3,(H,19,20)(H,15,16,18) LQQYBZYFFRDXNT-UHFFFAOYSA-N 33418 pyrimidinol carboxylic acid, 10 Ribonuclease H1 Homo sapiens 74000 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33418 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33418&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 54728657 85267036 ZINC43022979 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 59853 OC(=O)c1nc(Cc2c(Br)sc3ccc(Cl)cc23)[nH]c(=O)c1O InChI=1S/C14H8BrClN2O4S/c15-12-7(6-3-5(16)1-2-8(6)23-12)4-9-17-10(14(21)22)11(19)13(20)18-9/h1-3,19H,4H2,(H,21,22)(H,17,18,20) DHGDHAVRGLBZQJ-UHFFFAOYSA-N 33419 pyrimidinol carboxylic acid, 11 Ribonuclease H1 Homo sapiens 48500 8 20.00 C Curated from the literature by BindingDB 10.1021/jm900597q 10.7270/Q2TM78F2 19791799 aid1799248 Kirschberg, TA; Balakrishnan, M; Squires, NH; Barnes, T; Brendza, KM; Chen, X; Eisenberg, EJ; Jin, W; Kutty, N; Leavitt, S; Liclican, A; Liu, Q; Liu, X; Mak, J; Perry, JK; Wang, M; Watkins, WJ; Lansdon, EB Gilead Sciences Inc http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33419 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33419&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 54735569 85267037 ZINC43077900 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 60607 NC(=O)c1c(N)sc2CCCCCc12 InChI=1S/C10H14N2OS/c11-9(13)8-6-4-2-1-3-5-7(6)14-10(8)12/h1-5,12H2,(H2,11,13) LULYZYNTDPUEKK-UHFFFAOYSA-N 33045 2-amino-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophene-3-carboxamide::2-azanyl-5,6,7,8-tetrahydro-4H-cyclohepta[b]thiophene-3-carboxamide::MLS000056922::SMR000066289::cid_2997881::vinylogous urea, NSC727447 Ribonuclease H1 Homo sapiens 10600 8 20.00 C Curated from the literature by BindingDB 10.1021/cb8001039 10.7270/Q29P300F 18831589 aid1799252 Wendeler, M; Lee, HF; Bermingham, A; Miller, JT; Chertov, O; Bona, MK; Baichoo, NS; Ehteshami, M; Beutler, J; O'Keefe, BR; Gotte, M; Kvaratskhelia, M; Le Grice, S National Cancer Institute-Bethesda http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33045 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33045&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 2997881 252616175 ZINC37868494 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 60608 Cc1sc(NC(=O)c2ccco2)c(C(N)=O)c1C InChI=1S/C12H12N2O3S/c1-6-7(2)18-12(9(6)10(13)15)14-11(16)8-4-3-5-17-8/h3-5H,1-2H3,(H2,13,15)(H,14,16) ACRJYJHXXHYAJP-UHFFFAOYSA-N 33963 vinylogous urea, NSC727448 Ribonuclease H1 Homo sapiens 29000 8 20.00 C Curated from the literature by BindingDB 10.1021/cb8001039 10.7270/Q29P300F 18831589 aid1799252 Wendeler, M; Lee, HF; Bermingham, A; Miller, JT; Chertov, O; Bona, MK; Baichoo, NS; Ehteshami, M; Beutler, J; O'Keefe, BR; Gotte, M; Kvaratskhelia, M; Le Grice, S National Cancer Institute-Bethesda http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=33963 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=33963&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 673534 85300972 ZINC00035602 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4 50505296 [O-][N+](=O)c1ccc(o1)C(=O)OCC(=O)N(CC1CCCO1)c1nc(cs1)-c1ccc(Br)cc1 InChI=1S/C21H18BrN3O7S/c22-14-5-3-13(4-6-14)16-12-33-21(23-16)24(10-15-2-1-9-30-15)18(26)11-31-20(27)17-7-8-19(32-17)25(28)29/h3-8,12,15H,1-2,9-11H2 ZLVANECEZQYXPE-UHFFFAOYSA-N 50292881 5-nitro-furan-2-carboxylic acid [[4-(4-bromo-phenyl)-thiazol-2-yl]-(tetrahydro-furan-2-ylmethyl)-carbamoyl]-methyl ester::CHEMBL522795 Ribonuclease H1 Homo sapiens 50000 ChEMBL 10.1021/jm801071m 10.7270/Q2M32VSN 19178289 Fuji, H; Urano, E; Futahashi, Y; Hamatake, M; Tatsumi, J; Hoshino, T; Morikawa, Y; Yamamoto, N; Komano, J Chiba University http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=50292881 http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=pol&polymerid=4142&target=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search http://www.bindingdb.org/jsp/dbsearch/PrimarySearch_ki.jsp?energyterm=kJ/mole&tag=r21&monomerid=50292881&enzyme=Ribonuclease+H1&column=ki&startPg=0&Increment=50&submit=Search 4832749 104134432 CHEMBL522795 ZINC42891522 1 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 2QK9,2QKB,2QKK,3BSU Ribonuclease H1 RNH1_HUMAN O60930 B3KQU4 O60523 O60857 Q57Z93 Q5U0C1 Q6FHD4